inst/examples/run_all.R now writes figures to tempdir() instead of the
working directory, in line with CRAN policy.\usage line in bk_diversity.Rd to satisfy the Rd line-width
check (CRAN incoming pre-test); no user-visible change.inst/WORDLIST documenting the plant-breeding terms flagged by the
spell checker (all correct).bk_diallel() — Griffing (1956) diallel analysis, Method 2 (parents +
one set of F1s, no reciprocals), Model I (fixed): combining-ability ANOVA
(GCA, SCA), parental GCA effects, SCA matrix, Baker's predictability ratio and
variance components. Standard errors are computed exactly by propagating the
per-entry error variance through the linear estimators (no tabulated
constants).bk_plot() gains a bk_diallel method: GCA effect bars (default) and an SCA
heatmap (type = "sca").bk_data("diallel") — 6-parent half diallel, 3 reps.bk_lxt() — Line x Tester combining-ability analysis: combining-ability
ANOVA (crosses partitioned into lines, testers and line x tester), GCA effects
for lines and testers, SCA effects per cross, proportional contributions, and
GCA/SCA variance components with additive/dominance variances, average degree
of dominance and predictability ratio.bk_plot() gains a bk_lxt method: GCA effect bars (default) and an SCA
heatmap (type = "sca").bk_data("lxt") — 5 lines x 3 testers, 3 replications.First release.
bk_rbd(), bk_frbd(), bk_augmented()
(Augmented Alpha-Lattice and Augmented RCBD).bk_variability(), bk_correlation(), bk_path(),
bk_diversity() (Mahalanobis D² with Tocher and Ward clustering),
bk_stability() (Eberhart-Russell + AMMI).bk_plot() verb returns a publication-ready ggplot2 figure for
every result, using the bespoke theme_bk() and bk_palette() colour system.bk_data().inst/examples/run_all.R.